Package: ebvcube 0.2.3
ebvcube: Working with netCDF for Essential Biodiversity Variables
The concept of Essential Biodiversity Variables (EBV, <https://geobon.org/ebvs/what-are-ebvs/>) comes with a data structure based on the Network Common Data Form (netCDF). The 'ebvcube' 'R' package provides functionality to easily create, access and visualise this data. The EBV netCDFs can be downloaded from the EBV Data Portal: Christian Langer/ iDiv (2020) <https://portal.geobon.org/>.
Authors:
ebvcube_0.2.3.tar.gz
ebvcube_0.2.3.zip(r-4.5)ebvcube_0.2.3.zip(r-4.4)ebvcube_0.2.3.zip(r-4.3)
ebvcube_0.2.3.tgz(r-4.4-any)ebvcube_0.2.3.tgz(r-4.3-any)
ebvcube_0.2.3.tar.gz(r-4.5-noble)ebvcube_0.2.3.tar.gz(r-4.4-noble)
ebvcube_0.2.3.tgz(r-4.4-emscripten)ebvcube_0.2.3.tgz(r-4.3-emscripten)
ebvcube.pdf |ebvcube.html✨
ebvcube/json (API)
NEWS
| # Install 'ebvcube' in R: |
| install.packages('ebvcube', repos = c('https://luisequoss.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/luisequoss/ebvcube/issues
- world_boundaries - Simple outlines of world countries
biodiversity-standardsessential-biodiversity-variablesnetcdf4
Last updated 5 months agofrom:c2e9efa6f7. Checks:OK: 2 ERROR: 1 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 07 2024 |
| R-4.5-win | OK | Nov 07 2024 |
| R-4.5-linux | ERROR | Nov 07 2024 |
| R-4.4-win | NOTE | Nov 07 2024 |
| R-4.4-mac | NOTE | Nov 07 2024 |
| R-4.3-win | NOTE | Nov 07 2024 |
| R-4.3-mac | NOTE | Nov 07 2024 |
Exports:ebv_add_dataebv_analyseebv_attributeebv_createebv_create_taxonomyebv_datacubepathsebv_downloadebv_mapebv_propertiesebv_readebv_read_bbebv_read_shpebv_resampleebv_trendebv_write
Dependencies:abindaskpassbackportsBiocGenericsCFtimecheckmateclassclassIntclicolorspacecpp11crayoncurldata.tableDBIDelayedArraydplyre1071fansifarvergenericsggplot2gluegtableHDF5ArrayhttrIRangesisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemusemgcvmimemunsellncdf4ncmetanlmeopensslpillarpkgconfigplyrproxypurrrR6RColorBrewerRcppreshape2rhdf5rhdf5filtersRhdf5librlangRNetCDFs2S4ArraysS4VectorsscalessfSparseArraystringistringrsysterratibbletidyrtidyselecttidyterraunitsutf8vctrsviridisLitewithrwkXVectorzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| EBV netCDF properties class (S4) | EBV netCDF properties-class |
| Add data to your EBV netCDF | ebv_add_data |
| Get a simple explorative analysis of an EBV netCDF datacube | ebv_analyse |
| Write a new attribute value to an EBV netCDF | ebv_attribute |
| Create an EBV netCDF | ebv_create |
| Create an EBV netCDF with taxonomy | ebv_create_taxonomy |
| Get datacubepaths of EBV netCDF | ebv_datacubepaths |
| Download an EBV netCDF file | ebv_download |
| Map plot of an EBV netCDF | ebv_map |
| Read properties of EBV netCDF | ebv_properties |
| Read data from an EBV netCDF | ebv_read |
| Read subset (bounding box) of one datacube of an EBV netCDF | ebv_read_bb |
| Read subset (shapefile) of one datacube of an EBV netCDF | ebv_read_shp |
| Change the resolution of the data of an EBV netCDF | ebv_resample |
| Plot the trend of an EBV netCDF | ebv_trend |
| Write the extracted data on your disk as a GeoTiff | ebv_write |
| Working with netCDF for Essential Biodiversity Variables | ebvcube |
| Simple outlines of world countries | world_boundaries |
